Thursday, March 6, 2014

DNA Extraction



DNA


Today you will extract DNA from some of your cells and learn more about DNA.


Extracting DNA from Your Cells


Cells from the lining of your mouth come loose easily, so you will be able to collect cells containing your DNA by swishing a liquid around in your mouth. 

To extract DNA from your cells, you will need to separate the DNA from the other types of biological molecules in your cells.  You will be using the same basic steps that biologists use when they extract DNA (e.g. to clone DNA or to make a DNA fingerprint).  You will follow these 3 easy steps to extract the DNA:
  Detergent
eNzymes (meat tenderizer)
  Alcohol
 
Getting Your Sample of Cells
Obtain a cup with sports drink.  You will need to get thousands of your cheek cells in the sports drink in order to extract enough DNA to see.  Therefore you should swish the sports drink around in your mouth vigorously for at least one minute. Then spit the drink back into the cup.

Step 1: Detergent
Open the centrifuge tube (place the lid on a paper towel.  Why is this important?) Add a small amount of detergent to a centrifuge tube (about 0.25 mL).  Now carefully pour the drink containing your cheek cells into the test tube with detergent until the tube is half full. 


Step 2: Enzymes
Add a pinch of enzyme (meat tenderizer) to your centrifuge tube.  Replace the lid on the tube; gently invert the tube five times to mix.  Place the tube in the test tube rack.  Let the mixture sit for at least 10 minutes.  While you are waiting, answer the questions on the following pages. 



Why am I adding detergent?


Why am I adding enzymes? 




The protease in meat tenderizer comes from plants, but animals also make proteases.  What is one reason why humans and other animals need to have protein-cutting enzymes?





DNA Structure

DNA consists of two strands of nucleotides wound together in a spiral called a double helix.  Read the explanation in the figure before answering questions 1 and 2. 



 



















(Figure from Biology -- A Guide to the Natural World by Krogh)

 
1.  The three components of each nucleotide are:

______________________

______________________

______________________

Draw a rectangle around a single nucleotide in the double helix.

2.  The complete name for DNA is deoxyribonucleic acid.  Which component of each nucleotide accounts for the "deoxyribo” part of this name?








3.  DNA has the same double helix structure in all living organisms.  However, we know that a plant, mammal and bacterium must have different genes in their DNA to result in the very different characteristics of these different organisms.  So, the question is: What is different in the DNA of these different organisms?  Complete the following table to identify what is different between the DNA of the plant, mammal and bacterium.

Compare the plant and mammal DNA.
Compare the mammal and bacterium DNA.
  1. Is the arrangement of the sugar and phosphate groups the same in each type of DNA?


  1. Does each type of DNA contain the same four bases (A, C, G, T)?


  1. Is the sequence of bases the same in each type of DNA?


  1. Are the base-pairing rules the same in each type of DNA? 



In your attempt to analyze DNA samples from three different species, what claims can you make about the similarities and differences of the DNA samples?

Step 3: Alcohol
Using a pipette, slowly add cold rubbing alcohol into the test tube; let the alcohol run down the side of the test tube so it forms a layer on top of the soapy liquid. Add alcohol until you have about 2 cm of alcohol in the tube.  Alcohol is less dense than water, so it floats on top.  Do not mix or bump the test tube for 10 minutes.  DNA molecules will clump together where the soapy water below meets the cold alcohol above, and you will be able to see these clumps of DNA as white strands. 

Why doesn’t the alcohol mix with the water?
 

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